I agree with most of what others have said ~ it is best not to keep picking up the kitten that doesn't like it. If she struggles & makes it clear she's not comfortable being picked up, then to continue to do so will only make matters worse. After a while you may find she starts to avoid you when you try to approach her.
If you want to get her used to being handled, try sitting on the floor with her & let her chase a toy into your lap, or over your legs. When she's sleeping or relaxing just sit next to her & gently stroke down the sides of her cheeks & near her ears. Use a soft grooming brush (even a tooth brush) to groom her. Try hand feeding with small & very tasty treats that she doesn't get at any other time. All of this will get her used to being close to you & being touched without any stress & with only positive associations.
Like the others have said, cats react to being picked up differently. Do you know where these littens were raised? Could it be possible that one of the kittens was handled a bit too roughly as a new born? I've had lots of cats over the years, some very cuddly lap cats but others less keen on being picked up or sitting on a lap. However with all of them, they became much more cuddly as they got older so that even the cat that hated being touched was a cuddly lap cat at 10 years old!
Don't read any thing into the so-called "dominant / submissive" behaviours ~ cats don't have dominance hierarchies. One cat could be more motivated by food & may act more "possessively" around food, the other may value a warm, safe bed & another would regard attention from their owner as the most highly-prized resource in the house. Similarly with your kittens, one is more highly motivated to practice predatory skills by leaping around & play-fighting but the other is more motivated to explore new places & investigate new things.
This is part of the joys of owning cats ~ to watch them, see the differences, know what motivates them & interact with them in the ways that they like most

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If you are interested in cat behaviour & especially in kitten development, could I suggest you read a couple of good books? Any of Vicky Halls' books give good advice & insights into cat behaviour & are very easy reading. John Bradshaw's books (The True Nature of the Cat or The Behaviour of the Domestic Cat) are also very good & so is Sarah Heath's "Why Does My Cat.....?". This will help you know what to expect as your kittens grow up.
In the meantime, just enjoy them ~ this is a wonderful age to watch them as they seem to have so much fun, & get into all sorts of scrapes

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