History is not made at all. The charts have been around since 1952 and in the 1st couple of decades there were all sorts of competing charts - all using very small sales sample sizes, but non of them at the time were 'official'. In subsequent years one chart from the period was used as part of the 'official' chart history - the 1st in the 50s from NME and then from 1960 from Record Retailer (although the NME chart was still compiled and published) and then it was compiled independently and eventually morphed into the official chart as heard on Radio 1.
In 1984 local commercial radio decided to launch their own chart called 'The Network Chart'. It was also compiled independently by MRIB (Radio 1 by Gallup at that time), but used a smaller number of record stores than Gallup. If sales were sufficently large by a distance for a #1, then both charts would have the same #1. But there were several different numbers ones on both charts while both were running from 1984 to 1993.
From 1993 The Network Chart became the Pepsi Chart and then started to use the Official Top 10, so both charts were the same for the Top 10. When the Pepsi Chart became Hit 40 UK, that chart for a few months just used the Official Top 3 and then moved back to the official Top 10 - and Hit 40 UK has only just ended and become The Big Top 40.
It's not the only time this had occured on the Big Top 40 either. Last week La Roux was at #1 and the week before (the 1st week of The Big Top 40) was David Guetta / Kelly Rowland. Neither of those 2 were the offical #1 for those weeks.
Physical sales are now tiny, miniscule although the sales for new releases and those towards the top of the chart may sell completely disproportionately to the rest. So if the total sales across the board is 140 million a year and CD/vinyl is 4 million a year, but 15% is the ave share for the top selling CD - obviously that will skew things a bit. But it still means that the Radio 1 chart takes into account all sales whether they're from iTunes or all the other download sites and physical sales too.