Originally Posted by doctor blue box:
“In the alternate 'doctor is dead' timeline in turn left how/why would Sarah Jane possibly have been in the hospital on the moon? nothing in that scenario was different to how it would have been except for the doctor not being there, so Sarah Jane would have had to have heard about it and got to the hospital before it was transported in both the real reality and the alternate one, or in neither as far as I can tell.”
There's also an issue of dating the stories. In the main universe, 'Smith and Jones' happens on June 2nd 2008, whilst Luke and Maria don't meet Clyde until the new school term begins in September, so they can't have died together at the hospital. Mr Chowdry tells Donna it has only been a few months since the events of the Runaway Bride, which would make it March - several months earlier than June.
One explanation given in 'Timelink' by Jon Preddle, is that since the outcomes of the episodes in the parallel world are different, maybe the dating is too. Maybe the Bane arrived a year earlier than in the main universe, or more likely the closing of the Thames delayed the opening of the hospital, which in turn delayed the Plasmavore taking up residence there and the Judoon couldn't track them down until September, coinciding with Sarah Jane, Luke, Maria and Clyde meeting up at school and deciding to investigate the hospital in the absence of the Doctor.