The contract credits have nothing to do with the opening titles. Actors on guest contracts have been in the titles before (Ringo and Lolly), it's all to do with actor availability and scheduling/timing.
They couldn't add Naomi to the titles until Kyle's actor was back from his extended break because she lives with them and needed to be in the same shot in the current credit style. So I imagine that was shot quite a while back (and in the garden set as opposed to Ramsay Street).
Kate was easily removed because they already had a solo Paul shot (when he lived at the penthouse alone) and a shot of Number 26 without Kate (when she lived with Paul) so they only ever had to re-edit and use those alternate shots and then deliberately zoomed in on the pool shots to cut her out of them.
They couldn't replace Mason or Callum so easy as they are right there in the middle of both their respective shots, so they've held off until all the new arrivals were cast and onscreen and to when a decision was made about Scott McGregor (whether he's staying or leaving at the end of his guest contract) before they've started to shoot new titles.
By now nearly all of the shots need updated so I think they've been deliberately holding off in order to do a proper reshoot of the entire titles on one day and get it all edited and ready to go as one proper titles relaunch. The official instagram posted pictures recently of what looks like new titles being filmed in recent weeks (and this was when Morgana O'Reilly was in the UK) so in order to prepare for that, they've filmed her shot earlier than the rest.