I think in time and looking back with some distance and perspective then the true opinion of Moffat's era will come forward.
RTD era is looked back on very favourably, it had a lot of criticism when it was on but as the years go on since it came to an end its only looked on even more positively.
I think within time Moffats era will be looked back on and seen as the mess that it is, some great ideas in it and lots to enjoy but a mess, it won't be looked back on as favourably as RTD era. The poor arcs that are nonsense will sully the era, the poor characterisation (RTD era characters will hold up, Moffats won't) also brings it down (hey Amy Rory shouldn't you care that you lost your daughter, nah its ok she turned into River, we don't need to have her in our life and bring her up, we'll just easily move past that we lost our baby)
Moffats era will be remember for a lot of artificial reasons, it won't be remember for heart and great yarns, it will be remembered the way some of the 80s DW is (such as Trial of the Time Lord), its not remembered because of quality but rather because the stories have stuff put into it that plays into the grand mythology of DW. Moffat has made a point to include a lot of ooh DW mythology stuff, regeneration issue, The Doc's name (that went nowhere) the Doctor having a wife (that we actually see on screen rather than applied and is off screen) Time war stuff including the grand moment, a secret Doctor, male to female regenerations (to be fair that was a good thing to include) bringing back lots of old enemies, making the Tardis a women, giving the Doctor place of death according to the universe, giving a companion her own Tardis, making a companion save all the doctors and made him choose which Tardis to take and so on..... its all stuff that's like spraying over a wall and going remember me, it comes across as calculating and therefor artificial, RTD era will be remembered fondly (and I have problems with that era, to earth bound etc) for its characters and many great tales, its not trying to be remembered by including certain DW mythology stuff rather its just concentrating on telling stories and characters and that's why ultimately it will be remembered more fondly.
This is just how I read it, so don't get sweaty if you disagree