I was just thinking about how RTD may be planning to deal with the story involving Captain Jack's missing memories and I had an idea. What if the Doctor and Rose were somehow involved in their removal? At some point during season two they could encounter him, however it would be him from before they first met, as the story progresses they would work with him to solve some problem however there would come a point when they realise that what has happened will change the past/his future. At this point they make the decision to somehow erase his memory. If this is the case it also explains why he was left on the Gamestation since his actually being around at the time would rather confuse matters.
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