I think he'll get a Dalek story. I remember back when Peter Davison took over, the powers-that-be made a big fuss over the fact they wanted to stay away from the "traditional, well-known" monsters, yet even he got his Dalek story (Resurrection... IIRC)
Arguably, they even appeared with Paul McGann - they exterminated the Master at the beginning.
So, whether they appear this season (which I'd be disappointed with, cos it would obviously just be a ratings exercise) or next, those snot-filled pepper pots'll be back...